You are not logged in. | Log in
In Progress
Clinical

PB, Leukophoretic peripheral blood

CB, Cord blood

Purpose

In mice, two restricted DC progenitors, macrophage-dendritic progenitor (MDP) and common dendritic cell progenitor (CDP) demonstrate increasing commitment of DC lineage as they sequentially lose granulocyte and monocyte potential respectively. Identifying these progenitors has enabled understanding of the role of DCs and monocytes in immunity and tolerance in mice. In humans, however, restricted monocyte and DC progenitors remain unknown. Progress in studying human DC development has been hampered by lack of an in vitro culture system that recapitulates in vivo DC hematopoiesis. Here we report a culture system that supports development of CD34+ hematopoietic stem cell progenitors into the three major human DC subsets, monocytes, granulocytes, NK and B cells. Using this culture system we defined the pathway for human DC development, and revealed the sequential origin of human DCs from increasingly restricted progenitors: a granulocyte-monocyte-DC progenitor (hGMDP) that develops into a monocyte-DC progenitor (hMDP) that develops into monocytes and a common DC progenitor (hCDP) that is restricted to produce the three major DC subsets. The phenotype of the DC progenitors partially overlaps with granulocyte monocyte progenitors (GMPs). These progenitors reside in human cord blood and bone marrow but not in the blood or lymphoid tissues in the steady state.

Hypothesis

--

Experimental Design

We performed whole transcriptome expression analysis on monocytes and subsets of dendritic cells i.e. CD1c+ DCs, CD141+ DCs and CD303+ pDCs isolated from blood or differentiated in culture from cord blood CD34+ cells in presence of MS5 stromal cells and Flt3l, GM-CSF and SCF cytokines.

Experimental Variables

--

Controls

--

Methods

--

Additional Information

--

Microarray
Illumina HumanHT-12 v4
36 Samples Loaded: 36
Human (Homo sapiens)
Adult , DCs , Monocytes , Neonatal
Sample Set Spreadsheet
Please log in in order to upload files.
Samples Preview
Sample ID !Sample Title group donor treatment Cell subset
GSM1587749 CD1c+ cDCs_blood_2 [8363877084_D] PB CD1c+ DCs 2 none CD1c+ cDC
GSM1587750 CD1c+ cDCs_blood_4 [8363877084_E] PB CD1c+ DCs 4 none CD1c+ cDC
GSM1587751 pDCs_blood_4 [8363877100_B] PB CD303+ pDCs 4 none pDC
GSM1587752 CD141+ cDCs_blood_2 [8363877100_I] PB CD141+ DCs 2 none CD141+ cDC
GSM1587753 CD141+ cDCs_blood_5 [8363877100_K] PB CD141+ DCs 5 none CD141+ cDC
Please log in in order to upload files.
File

Log2 Transformed
Raw Signal
  •   |  View in GXB »
Clinical Datasource
Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Group Donor Treatment Cell subset SampleID
GSM1587749
CD1c+ cDCs_blood_2 [8363877084_D]
PB CD1c+ DCs
2
none
CD1c+ cDC
S20
GSM1587750
CD1c+ cDCs_blood_4 [8363877084_E]
PB CD1c+ DCs
4
none
CD1c+ cDC
S22
GSM1587751
pDCs_blood_4 [8363877100_B]
PB CD303+ pDCs
4
none
pDC
S10
GSM1587752
CD141+ cDCs_blood_2 [8363877100_I]
PB CD141+ DCs
2
none
CD141+ cDC
S14
GSM1587753
CD141+ cDCs_blood_5 [8363877100_K]
PB CD141+ DCs
5
none
CD141+ cDC
S17
GSM1587754
Monocytes_blood_6 [8363885001_K]
PB monocytes
6
none
monocytes
S6
GSM1587755
CD1c+ cDCs_blood_3 [8363885004_F]
PB CD1c+ DCs
3
none
CD1c+ cDC
S21
GSM1587756
pDCs_blood_1 [8363885008_A]
PB CD303+ pDCs
1
none
pDC
S7
GSM1587757
CD1c+ cDCs_blood_6 [8363885008_C]
PB CD1c+ DCs
6
none
CD1c+ cDC
S24
GSM1587758
CD141+ cDCs_blood_3 [8363885008_G]
PB CD141+ DCs
3
none
CD141+ cDC
S15
GSM1587759
Monocytes_blood_1 [8363885011_E]
PB monocytes
1
none
monocytes
S1
GSM1587760
CD141+ cDCs_blood_4 [8363885011_J ]
PB CD141+ DCs
4
none
CD141+ cDC
S16
GSM1587761
pDCs_blood_6 [8363885011_L]
PB CD303+ pDCs
6
none
pDC
S12
GSM1587762
CD141+ cDCs_blood_1 [8363885012_E]
PB CD141+ DCs
1
none
CD141+ cDC
S13
GSM1587763
Monocytes_blood_2 [8363885012_H]
PB monocytes
2
none
monocytes
S2
GSM1587764
Monocytes_blood_5 [8363885016_A]
PB monocytes
5
none
monocytes
S5
GSM1587765
pDCs_blood_2 [8363885018_C]
PB CD303+ pDCs
2
none
pDC
S8
GSM1587766
pDCs_blood_5 [8363885021_A]
PB CD303+ pDCs
5
none
pDC
S11
GSM1587767
CD1c+ cDCs_blood_1 [8363885022_F]
PB CD1c+ DCs
1
none
CD1c+ cDC
S19
GSM1587768
pDCs_blood_3 [8363885022_H]
PB CD303+ pDCs
3
none
pDC
S9
GSM1587769
CD141+ cDCs_blood_6 [8363885026_A]
PB CD141+ DCs
6
none
CD141+ cDC
S18
GSM1587770
CD1c+ cDCs_culture_8 [9406915091_C]
CB CD1c+ DCs
8
MS5 + Flt3l + SCF + GM-CSF
CD1c+ cDC
S38
GSM1587771
CD1c+ cDCs_culture_10 [9406915091_D]
CB CD1c+ DCs
10
MS5 + Flt3l + SCF + GM-CSF
CD1c+ cDC
S40
GSM1587772
Monocytes_culture_7 [9406915091_E]
CB monocytes
7
MS5 + Flt3l + SCF + GM-CSF
monocytes
S25
GSM1587773
Monocytes_culture_8 [9406915091_G]
CB monocytes
8
MS5 + Flt3l + SCF + GM-CSF
monocytes
S26
GSM1587774
pDCs_culture_9 [9406915091_H]
CB CD303+ pDCs
9
MS5 + Flt3l + SCF + GM-CSF
pDC
S31
GSM1587775
CD141+ cDCs_culture_9 [9406915091_K]
CB CD141+ DCs
9
MS5 + Flt3l + SCF + GM-CSF
CD141+ cDC
S35
GSM1587776
CD1c+ cDCs_culture_9 [9406915091_L]
CB CD1c+ DCs
9
MS5 + Flt3l + SCF + GM-CSF
CD1c+ cDC
S39
GSM1587777
Monocytes_culture_9 [9407205014_B]
CB monocytes
9
MS5 + Flt3l + SCF + GM-CSF
monocytes
S27
GSM1587778
pDCs_culture_8 [9407205014_C]
CB CD303+ pDCs
8
MS5 + Flt3l + SCF + GM-CSF
pDC
S30
GSM1587779
CD1c+ cDCs_culture_7 [9407205014_E]
CB CD1c+ DCs
7
MS5 + Flt3l + SCF + GM-CSF
CD1c+ cDC
S37
GSM1587780
pDCs_culture_7 [9407205014_F]
CB CD303+ pDCs
7
MS5 + Flt3l + SCF + GM-CSF
pDC
S29
GSM1587781
pDCs_culture_10 [9407205014_G]
CB CD303+ pDCs
10
MS5 + Flt3l + SCF + GM-CSF
pDC
S32
GSM1587782
CD141+ cDCs_culture_7 [9407205014_H]
CB CD141+ DCs
7
MS5 + Flt3l + SCF + GM-CSF
CD141+ cDC
S33
GSM1587783
CD141+ cDCs_culture_8 [9407205014_I]
CB CD141+ DCs
8
MS5 + Flt3l + SCF + GM-CSF
CD141+ cDC
S34
GSM1587784
CD141+ cDCs_culture_10 [9407205014_J]
CB CD141+ DCs
10
MS5 + Flt3l + SCF + GM-CSF
CD141+ cDC
S36

Group Sets View in Gene Expression Browser

Name  
All Samples Default  View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set  
All Samples
Your bug report has been sent!