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Clinical

GSE67057

Purpose

Previous studies have shown that purified dendritic cells (DCs) have cell-intrinsic, age-dependent differences in their response to TLR stimulation. To delineate which aspects of the age-dependent difference in innate immunity are cell intrinsic vs extrinsic, we searched for global differences to TLR7/8 stimulation in purified adult vs neonatal DC populations. We hypothesize that very few selected cell intrinsic differences in gene expression of key immune genes between these 2 age groups exist, and the bulk would be cell extrinsic differences. The results show that there are age-dependent differences in expression of several key genes involved in the immune response at baseline already. Upon stimulation, we identified a substantially larger fraction of age-dependent differentially expressed genes in conventional than plasmacytoid DCs. Bioinformatics analyses indicate that important immune pathways were significantly differentially expressed in DC subsets between the 2 age groups.

Hypothesis

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Experimental Design

Total RNA was isolated from purified human conventional and plasmacytoid dendritic cells from 6 adult and 6 cord blood donors that were stimulated with 3M-003 at a final concentration of 5 uM for 1 and 6 hr.

Experimental Variables

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Controls

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Methods

human adult and neonatal dendritic cell subsets comparison to TLR7/8 stimulation

Additional Information

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Microarray
Illumina HumanWG-6 v2
72 Samples Loaded: 72
Human (Homo sapiens)
Neonatal , Adult , DCs
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title Gender group time individual
GSM1637575 cDC_Neonate_Unstim_0h_subj1 Female cord blood cDC unstim 0h 1
GSM1637576 cDC_Neonate_3M003_1h_subj1 Female cord blood cDC 1h 1h 1
GSM1637577 cDC_Neonate_3M003_6h_subj1 Female cord blood cDC 6h 6h 1
GSM1637578 cDC_Neonate_Unstim_0h_subj2 Female cord blood cDC unstim 0h 2
GSM1637579 cDC_Neonate_3M003_1h_subj2 Female cord blood cDC 1h 1h 2
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Raw Signal
Raw Signal
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Samples Viewer / Editor

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Sample ID !Sample Title Gender Group Time Individual Agent Cell type Age group
GSM1637575
cDC_Neonate_Unstim_0h_subj1
Female
cord blood cDC unstim
0h
1
control
cDC
Neonate
GSM1637576
cDC_Neonate_3M003_1h_subj1
Female
cord blood cDC 1h
1h
1
3M003
cDC
Neonate
GSM1637577
cDC_Neonate_3M003_6h_subj1
Female
cord blood cDC 6h
6h
1
3M003
cDC
Neonate
GSM1637578
cDC_Neonate_Unstim_0h_subj2
Female
cord blood cDC unstim
0h
2
control
cDC
Neonate
GSM1637579
cDC_Neonate_3M003_1h_subj2
Female
cord blood cDC 1h
1h
2
3M003
cDC
Neonate
GSM1637580
cDC_Neonate_3M003_6h_subj2
Female
cord blood cDC 6h
6h
2
3M003
cDC
Neonate
GSM1637581
cDC_Neonate_Unstim_0h_subj3
Female
cord blood cDC unstim
0h
3
control
cDC
Neonate
GSM1637582
cDC_Neonate_3M003_1h_subj3
Female
cord blood cDC 1h
1h
3
3M003
cDC
Neonate
GSM1637583
cDC_Neonate_3M003_6h_subj3
Female
cord blood cDC 6h
6h
3
3M003
cDC
Neonate
GSM1637584
cDC_Adult_Unstim_0h_subj1
Female
adult cDC unstim
0h
1
control
cDC
Adult
GSM1637585
cDC_Adult_3M003_1h_subj1
Female
adult cDC 1h
1h
1
3M003
cDC
Adult
GSM1637586
cDC_Adult_3M003_6h_subj1
Female
adult cDC 6h
6h
1
3M003
cDC
Adult
GSM1637587
cDC_Adult_Unstim_0h_subj2
Male
adult cDC unstim
0h
2
control
cDC
Adult
GSM1637588
cDC_Adult_3M003_1h_subj2
Male
adult cDC 1h
1h
2
3M003
cDC
Adult
GSM1637589
cDC_Adult_3M003_6h_subj2
Male
adult cDC 6h
6h
2
3M003
cDC
Adult
GSM1637590
cDC_Neonate_Unstim_0h_subj4
Male
cord blood cDC unstim
0h
4
control
cDC
Neonate
GSM1637591
cDC_Neonate_3M003_1h_subj4
Male
cord blood cDC 1h
1h
4
3M003
cDC
Neonate
GSM1637592
cDC_Neonate_3M003_6h_subj4
Male
cord blood cDC 6h
6h
4
3M003
cDC
Neonate
GSM1637593
cDC_Neonate_Unstim_0h_subj5
Male
cord blood cDC unstim
0h
5
control
cDC
Neonate
GSM1637594
cDC_Neonate_3M003_1h_subj5
Male
cord blood cDC 1h
1h
5
3M003
cDC
Neonate
GSM1637595
cDC_Neonate_3M003_6h_subj5
Male
cord blood cDC 6h
6h
5
3M003
cDC
Neonate
GSM1637596
cDC_Neonate_Unstim_0h_subj6
Male
cord blood cDC unstim
0h
6
control
cDC
Neonate
GSM1637597
cDC_Neonate_3M003_1h_subj6
Male
cord blood cDC 1h
1h
6
3M003
cDC
Neonate
GSM1637598
cDC_Neonate_3M003_6h_subj6
Male
cord blood cDC 6h
6h
6
3M003
cDC
Neonate
GSM1637599
cDC_Adult_Unstim_0h_subj3
Female
adult cDC unstim
0h
3
control
cDC
Adult
GSM1637600
cDC_Adult_3M003_1h_subj3
Female
adult cDC 1h
1h
3
3M003
cDC
Adult
GSM1637601
cDC_Adult_3M003_6h_subj3
Female
adult cDC 6h
6h
3
3M003
cDC
Adult
GSM1637602
cDC_Adult_Unstim_0h_subj4
Male
adult cDC unstim
0h
4
control
cDC
Adult
GSM1637603
cDC_Adult_3M003_1h_subj4
Male
adult cDC 1h
1h
4
3M003
cDC
Adult
GSM1637604
cDC_Adult_3M003_6h_subj4
Male
adult cDC 6h
6h
4
3M003
cDC
Adult
GSM1637605
cDC_Adult_Unstim_0h_subj5
Female
adult cDC unstim
0h
5
control
cDC
Adult
GSM1637606
cDC_Adult_3M003_1h_subj5
Female
adult cDC 1h
1h
5
3M003
cDC
Adult
GSM1637607
cDC_Adult_3M003_6h_subj5
Female
adult cDC 6h
6h
5
3M003
cDC
Adult
GSM1637608
cDC_Adult_Unstim_0h_subj6
Male
adult cDC unstim
0h
6
control
cDC
Adult
GSM1637609
cDC_Adult_3M003_1h_subj6
Male
adult cDC 1h
1h
6
3M003
cDC
Adult
GSM1637610
cDC_Adult_3M003_6h_subj6
Male
adult cDC 6h
6h
6
3M003
cDC
Adult
GSM1637611
pDC_Adult_Unstim_0h_subj1
Female
adult pDC unstim
0h
1
control
pDC
Adult
GSM1637612
pDC_Adult_3M003_1h_subj1
Female
adult pDC 1h
1h
1
3M003
pDC
Adult
GSM1637613
pDC_Adult_3M003_6h_subj1
Female
adult pDC 6h
6h
1
3M003
pDC
Adult
GSM1637614
pDC_Neonate_Unstim_0h_subj1
Female
cord blood pDC unstim
0h
1
control
pDC
Neonate
GSM1637615
pDC_Neonate_3M003_1h_subj1
Female
cord blood pDC 1h
1h
1
3M003
pDC
Neonate
GSM1637616
pDC_Neonate_3M003_6h_subj1
Female
cord blood pDC 6h
6h
1
3M003
pDC
Neonate
GSM1637617
pDC_Adult_Unstim_0h_subj2
Female
adult pDC unstim
0h
2
control
pDC
Adult
GSM1637618
pDC_Adult_3M003_1h_subj2
Female
adult pDC 1h
1h
2
3M003
pDC
Adult
GSM1637619
pDC_Adult_3M003_6h_subj2
Female
adult pDC 6h
6h
2
3M003
pDC
Adult
GSM1637620
pDC_Adult_Unstim_0h_subj3
Male
adult pDC unstim
0h
3
control
pDC
Adult
GSM1637621
pDC_Adult_3M003_1h_subj3
Male
adult pDC 1h
1h
3
3M003
pDC
Adult
GSM1637622
pDC_Adult_3M003_6h_subj3
Male
adult pDC 6h
6h
3
3M003
pDC
Adult
GSM1637623
pDC_Neonate_Unstim_0h_subj2
Female
cord blood pDC unstim
0h
2
control
pDC
Neonate
GSM1637624
pDC_Neonate_3M003_1h_subj2
Female
cord blood pDC 1h
1h
2
3M003
pDC
Neonate
GSM1637625
pDC_Neonate_3M003_6h_subj2
Female
cord blood pDC 6h
6h
2
3M003
pDC
Neonate
GSM1637626
pDC_Neonate_Unstim_0h_subj3
Female
cord blood pDC unstim
0h
3
control
pDC
Neonate
GSM1637627
pDC_Neonate_3M003_1h_subj3
Female
cord blood pDC 1h
1h
3
3M003
pDC
Neonate
GSM1637628
pDC_Neonate_3M003_6h_subj3
Female
cord blood pDC 6h
6h
3
3M003
pDC
Neonate
GSM1637629
pDC_Adult_Unstim_0h_subj4
Male
adult pDC unstim
0h
4
control
pDC
Adult
GSM1637630
pDC_Adult_3M003_1h_subj4
Male
adult pDC 1h
1h
4
3M003
pDC
Adult
GSM1637631
pDC_Adult_3M003_6h_subj4
Male
adult pDC 6h
6h
4
3M003
pDC
Adult
GSM1637632
pDC_Adult_Unstim_0h_subj5
Male
adult pDC unstim
0h
5
control
pDC
Adult
GSM1637633
pDC_Adult_3M003_1h_subj5
Male
adult pDC 1h
1h
5
3M003
pDC
Adult
GSM1637634
pDC_Adult_3M003_6h_subj5
Male
adult pDC 6h
6h
5
3M003
pDC
Adult
GSM1637635
pDC_Neonate_Unstim_0h_subj4
Male
cord blood pDC unstim
0h
4
control
pDC
Neonate
GSM1637636
pDC_Neonate_3M003_1h_subj4
Male
cord blood pDC 1h
1h
4
3M003
pDC
Neonate
GSM1637637
pDC_Neonate_3M003_6h_subj4
Male
cord blood pDC 6h
6h
4
3M003
pDC
Neonate
GSM1637638
pDC_Neonate_Unstim_0h_subj5
Male
cord blood pDC unstim
0h
5
control
pDC
Neonate
GSM1637639
pDC_Neonate_3M003_1h_subj5
Male
cord blood pDC 1h
1h
5
3M003
pDC
Neonate
GSM1637640
pDC_Neonate_3M003_6h_subj5
Male
cord blood pDC 6h
6h
5
3M003
pDC
Neonate
GSM1637641
pDC_Neonate_Unstim_0h_subj6
Male
cord blood pDC unstim
0h
6
control
pDC
Neonate
GSM1637642
pDC_Neonate_3M003_1h_subj6
Male
cord blood pDC 1h
1h
6
3M003
pDC
Neonate
GSM1637643
pDC_Neonate_3M003_6h_subj6
Male
cord blood pDC 6h
6h
6
3M003
pDC
Neonate
GSM1637644
pDC_Adult_Unstim_0h_subj6
Female
adult pDC unstim
0h
6
control
pDC
Adult
GSM1637645
pDC_Adult_3M003_1h_subj6
Female
adult pDC 1h
1h
6
3M003
pDC
Adult
GSM1637646
pDC_Adult_3M003_6h_subj6
Female
adult pDC 6h
6h
6
3M003
pDC
Adult

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