GSE67057
Previous studies have shown that purified dendritic cells (DCs) have cell-intrinsic, age-dependent differences in their response to TLR stimulation. To delineate which aspects of the age-dependent difference in innate immunity are cell intrinsic vs extrinsic, we searched for global differences to TLR7/8 stimulation in purified adult vs neonatal DC populations. We hypothesize that very few selected cell intrinsic differences in gene expression of key immune genes between these 2 age groups exist, and the bulk would be cell extrinsic differences. The results show that there are age-dependent differences in expression of several key genes involved in the immune response at baseline already. Upon stimulation, we identified a substantially larger fraction of age-dependent differentially expressed genes in conventional than plasmacytoid DCs. Bioinformatics analyses indicate that important immune pathways were significantly differentially expressed in DC subsets between the 2 age groups.
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Total RNA was isolated from purified human conventional and plasmacytoid dendritic cells from 6 adult and 6 cord blood donors that were stimulated with 3M-003 at a final concentration of 5 uM for 1 and 6 hr.
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human adult and neonatal dendritic cell subsets comparison to TLR7/8 stimulation
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Sample ID | !Sample Title | Gender | group | time | individual |
---|---|---|---|---|---|
GSM1637575 | cDC_Neonate_Unstim_0h_subj1 | Female | cord blood cDC unstim | 0h | 1 |
GSM1637576 | cDC_Neonate_3M003_1h_subj1 | Female | cord blood cDC 1h | 1h | 1 |
GSM1637577 | cDC_Neonate_3M003_6h_subj1 | Female | cord blood cDC 6h | 6h | 1 |
GSM1637578 | cDC_Neonate_Unstim_0h_subj2 | Female | cord blood cDC unstim | 0h | 2 |
GSM1637579 | cDC_Neonate_3M003_1h_subj2 | Female | cord blood cDC 1h | 1h | 2 |
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Sample ID | !Sample Title | Gender | Group | Time | Individual | Agent | Cell type | Age group |
---|---|---|---|---|---|---|---|---|
GSM1637575 | cDC_Neonate_Unstim_0h_subj1 |
Female |
cord blood cDC unstim |
0h |
1 |
control |
cDC |
Neonate |
GSM1637576 | cDC_Neonate_3M003_1h_subj1 |
Female |
cord blood cDC 1h |
1h |
1 |
3M003 |
cDC |
Neonate |
GSM1637577 | cDC_Neonate_3M003_6h_subj1 |
Female |
cord blood cDC 6h |
6h |
1 |
3M003 |
cDC |
Neonate |
GSM1637578 | cDC_Neonate_Unstim_0h_subj2 |
Female |
cord blood cDC unstim |
0h |
2 |
control |
cDC |
Neonate |
GSM1637579 | cDC_Neonate_3M003_1h_subj2 |
Female |
cord blood cDC 1h |
1h |
2 |
3M003 |
cDC |
Neonate |
GSM1637580 | cDC_Neonate_3M003_6h_subj2 |
Female |
cord blood cDC 6h |
6h |
2 |
3M003 |
cDC |
Neonate |
GSM1637581 | cDC_Neonate_Unstim_0h_subj3 |
Female |
cord blood cDC unstim |
0h |
3 |
control |
cDC |
Neonate |
GSM1637582 | cDC_Neonate_3M003_1h_subj3 |
Female |
cord blood cDC 1h |
1h |
3 |
3M003 |
cDC |
Neonate |
GSM1637583 | cDC_Neonate_3M003_6h_subj3 |
Female |
cord blood cDC 6h |
6h |
3 |
3M003 |
cDC |
Neonate |
GSM1637584 | cDC_Adult_Unstim_0h_subj1 |
Female |
adult cDC unstim |
0h |
1 |
control |
cDC |
Adult |
GSM1637585 | cDC_Adult_3M003_1h_subj1 |
Female |
adult cDC 1h |
1h |
1 |
3M003 |
cDC |
Adult |
GSM1637586 | cDC_Adult_3M003_6h_subj1 |
Female |
adult cDC 6h |
6h |
1 |
3M003 |
cDC |
Adult |
GSM1637587 | cDC_Adult_Unstim_0h_subj2 |
Male |
adult cDC unstim |
0h |
2 |
control |
cDC |
Adult |
GSM1637588 | cDC_Adult_3M003_1h_subj2 |
Male |
adult cDC 1h |
1h |
2 |
3M003 |
cDC |
Adult |
GSM1637589 | cDC_Adult_3M003_6h_subj2 |
Male |
adult cDC 6h |
6h |
2 |
3M003 |
cDC |
Adult |
GSM1637590 | cDC_Neonate_Unstim_0h_subj4 |
Male |
cord blood cDC unstim |
0h |
4 |
control |
cDC |
Neonate |
GSM1637591 | cDC_Neonate_3M003_1h_subj4 |
Male |
cord blood cDC 1h |
1h |
4 |
3M003 |
cDC |
Neonate |
GSM1637592 | cDC_Neonate_3M003_6h_subj4 |
Male |
cord blood cDC 6h |
6h |
4 |
3M003 |
cDC |
Neonate |
GSM1637593 | cDC_Neonate_Unstim_0h_subj5 |
Male |
cord blood cDC unstim |
0h |
5 |
control |
cDC |
Neonate |
GSM1637594 | cDC_Neonate_3M003_1h_subj5 |
Male |
cord blood cDC 1h |
1h |
5 |
3M003 |
cDC |
Neonate |
GSM1637595 | cDC_Neonate_3M003_6h_subj5 |
Male |
cord blood cDC 6h |
6h |
5 |
3M003 |
cDC |
Neonate |
GSM1637596 | cDC_Neonate_Unstim_0h_subj6 |
Male |
cord blood cDC unstim |
0h |
6 |
control |
cDC |
Neonate |
GSM1637597 | cDC_Neonate_3M003_1h_subj6 |
Male |
cord blood cDC 1h |
1h |
6 |
3M003 |
cDC |
Neonate |
GSM1637598 | cDC_Neonate_3M003_6h_subj6 |
Male |
cord blood cDC 6h |
6h |
6 |
3M003 |
cDC |
Neonate |
GSM1637599 | cDC_Adult_Unstim_0h_subj3 |
Female |
adult cDC unstim |
0h |
3 |
control |
cDC |
Adult |
GSM1637600 | cDC_Adult_3M003_1h_subj3 |
Female |
adult cDC 1h |
1h |
3 |
3M003 |
cDC |
Adult |
GSM1637601 | cDC_Adult_3M003_6h_subj3 |
Female |
adult cDC 6h |
6h |
3 |
3M003 |
cDC |
Adult |
GSM1637602 | cDC_Adult_Unstim_0h_subj4 |
Male |
adult cDC unstim |
0h |
4 |
control |
cDC |
Adult |
GSM1637603 | cDC_Adult_3M003_1h_subj4 |
Male |
adult cDC 1h |
1h |
4 |
3M003 |
cDC |
Adult |
GSM1637604 | cDC_Adult_3M003_6h_subj4 |
Male |
adult cDC 6h |
6h |
4 |
3M003 |
cDC |
Adult |
GSM1637605 | cDC_Adult_Unstim_0h_subj5 |
Female |
adult cDC unstim |
0h |
5 |
control |
cDC |
Adult |
GSM1637606 | cDC_Adult_3M003_1h_subj5 |
Female |
adult cDC 1h |
1h |
5 |
3M003 |
cDC |
Adult |
GSM1637607 | cDC_Adult_3M003_6h_subj5 |
Female |
adult cDC 6h |
6h |
5 |
3M003 |
cDC |
Adult |
GSM1637608 | cDC_Adult_Unstim_0h_subj6 |
Male |
adult cDC unstim |
0h |
6 |
control |
cDC |
Adult |
GSM1637609 | cDC_Adult_3M003_1h_subj6 |
Male |
adult cDC 1h |
1h |
6 |
3M003 |
cDC |
Adult |
GSM1637610 | cDC_Adult_3M003_6h_subj6 |
Male |
adult cDC 6h |
6h |
6 |
3M003 |
cDC |
Adult |
GSM1637611 | pDC_Adult_Unstim_0h_subj1 |
Female |
adult pDC unstim |
0h |
1 |
control |
pDC |
Adult |
GSM1637612 | pDC_Adult_3M003_1h_subj1 |
Female |
adult pDC 1h |
1h |
1 |
3M003 |
pDC |
Adult |
GSM1637613 | pDC_Adult_3M003_6h_subj1 |
Female |
adult pDC 6h |
6h |
1 |
3M003 |
pDC |
Adult |
GSM1637614 | pDC_Neonate_Unstim_0h_subj1 |
Female |
cord blood pDC unstim |
0h |
1 |
control |
pDC |
Neonate |
GSM1637615 | pDC_Neonate_3M003_1h_subj1 |
Female |
cord blood pDC 1h |
1h |
1 |
3M003 |
pDC |
Neonate |
GSM1637616 | pDC_Neonate_3M003_6h_subj1 |
Female |
cord blood pDC 6h |
6h |
1 |
3M003 |
pDC |
Neonate |
GSM1637617 | pDC_Adult_Unstim_0h_subj2 |
Female |
adult pDC unstim |
0h |
2 |
control |
pDC |
Adult |
GSM1637618 | pDC_Adult_3M003_1h_subj2 |
Female |
adult pDC 1h |
1h |
2 |
3M003 |
pDC |
Adult |
GSM1637619 | pDC_Adult_3M003_6h_subj2 |
Female |
adult pDC 6h |
6h |
2 |
3M003 |
pDC |
Adult |
GSM1637620 | pDC_Adult_Unstim_0h_subj3 |
Male |
adult pDC unstim |
0h |
3 |
control |
pDC |
Adult |
GSM1637621 | pDC_Adult_3M003_1h_subj3 |
Male |
adult pDC 1h |
1h |
3 |
3M003 |
pDC |
Adult |
GSM1637622 | pDC_Adult_3M003_6h_subj3 |
Male |
adult pDC 6h |
6h |
3 |
3M003 |
pDC |
Adult |
GSM1637623 | pDC_Neonate_Unstim_0h_subj2 |
Female |
cord blood pDC unstim |
0h |
2 |
control |
pDC |
Neonate |
GSM1637624 | pDC_Neonate_3M003_1h_subj2 |
Female |
cord blood pDC 1h |
1h |
2 |
3M003 |
pDC |
Neonate |
GSM1637625 | pDC_Neonate_3M003_6h_subj2 |
Female |
cord blood pDC 6h |
6h |
2 |
3M003 |
pDC |
Neonate |
GSM1637626 | pDC_Neonate_Unstim_0h_subj3 |
Female |
cord blood pDC unstim |
0h |
3 |
control |
pDC |
Neonate |
GSM1637627 | pDC_Neonate_3M003_1h_subj3 |
Female |
cord blood pDC 1h |
1h |
3 |
3M003 |
pDC |
Neonate |
GSM1637628 | pDC_Neonate_3M003_6h_subj3 |
Female |
cord blood pDC 6h |
6h |
3 |
3M003 |
pDC |
Neonate |
GSM1637629 | pDC_Adult_Unstim_0h_subj4 |
Male |
adult pDC unstim |
0h |
4 |
control |
pDC |
Adult |
GSM1637630 | pDC_Adult_3M003_1h_subj4 |
Male |
adult pDC 1h |
1h |
4 |
3M003 |
pDC |
Adult |
GSM1637631 | pDC_Adult_3M003_6h_subj4 |
Male |
adult pDC 6h |
6h |
4 |
3M003 |
pDC |
Adult |
GSM1637632 | pDC_Adult_Unstim_0h_subj5 |
Male |
adult pDC unstim |
0h |
5 |
control |
pDC |
Adult |
GSM1637633 | pDC_Adult_3M003_1h_subj5 |
Male |
adult pDC 1h |
1h |
5 |
3M003 |
pDC |
Adult |
GSM1637634 | pDC_Adult_3M003_6h_subj5 |
Male |
adult pDC 6h |
6h |
5 |
3M003 |
pDC |
Adult |
GSM1637635 | pDC_Neonate_Unstim_0h_subj4 |
Male |
cord blood pDC unstim |
0h |
4 |
control |
pDC |
Neonate |
GSM1637636 | pDC_Neonate_3M003_1h_subj4 |
Male |
cord blood pDC 1h |
1h |
4 |
3M003 |
pDC |
Neonate |
GSM1637637 | pDC_Neonate_3M003_6h_subj4 |
Male |
cord blood pDC 6h |
6h |
4 |
3M003 |
pDC |
Neonate |
GSM1637638 | pDC_Neonate_Unstim_0h_subj5 |
Male |
cord blood pDC unstim |
0h |
5 |
control |
pDC |
Neonate |
GSM1637639 | pDC_Neonate_3M003_1h_subj5 |
Male |
cord blood pDC 1h |
1h |
5 |
3M003 |
pDC |
Neonate |
GSM1637640 | pDC_Neonate_3M003_6h_subj5 |
Male |
cord blood pDC 6h |
6h |
5 |
3M003 |
pDC |
Neonate |
GSM1637641 | pDC_Neonate_Unstim_0h_subj6 |
Male |
cord blood pDC unstim |
0h |
6 |
control |
pDC |
Neonate |
GSM1637642 | pDC_Neonate_3M003_1h_subj6 |
Male |
cord blood pDC 1h |
1h |
6 |
3M003 |
pDC |
Neonate |
GSM1637643 | pDC_Neonate_3M003_6h_subj6 |
Male |
cord blood pDC 6h |
6h |
6 |
3M003 |
pDC |
Neonate |
GSM1637644 | pDC_Adult_Unstim_0h_subj6 |
Female |
adult pDC unstim |
0h |
6 |
control |
pDC |
Adult |
GSM1637645 | pDC_Adult_3M003_1h_subj6 |
Female |
adult pDC 1h |
1h |
6 |
3M003 |
pDC |
Adult |
GSM1637646 | pDC_Adult_3M003_6h_subj6 |
Female |
adult pDC 6h |
6h |
6 |
3M003 |
pDC |
Adult |
Name | ||
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