Neonates manifest a unique host response to sepsis even among other children. Preterm neonates may experience sepsis soon after birth or during often protracted birth hospitalizations as they attain physiologic maturity. We examined the transcriptome using genome-wide expression profiling on prospectively collected peripheral blood samples from infants evaluated for sepsis within 24 hours after clinical presentation. Simultaneous plasma samples were examined for alterations in inflammatory mediators. Group designation (sepsis or uninfected) was determined retrospectively based on clinical exam and laboratory results over the next 72 hours from the time of evaluation. Unsupervised analysis showed the major node of separation between groups was timing of sepsis episode relative to birth (early, <3 days or late, >3 days). Principal component analyses revealed significant differences between patients with early or late sepsis despite the presence of similar key immunologic pathway aberrations in both groups. Unique to neonates, the uninfected state and host response to sepsis is significantly affected by timing relative to birth. Future therapeutic approaches may need to be tailored to the timing of the infectious event based on post-natal age.
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We used human microarrays to detail the molecular profile of the events that occur following sepsis in hospitalized neonatesPlease note that 'uninfected chorio' represents babies who were not infected but had chorioamnionitis exposure
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Sample ID | !Sample Title | infection | tissue | treatment | Age group |
---|---|---|---|---|---|
GSM1707353 | 9A | clinical sepsis | whole blood | EARLY-clinical sepsis | EARLY |
GSM1707354 | 9B | clinical sepsis | whole blood | EARLY-clinical sepsis | EARLY |
GSM1707355 | 9C | clinical sepsis | whole blood | EARLY-clinical sepsis | EARLY |
GSM1707356 | 10A | uninfected | whole blood | EARLY-uninfected | EARLY |
GSM1707357 | 10B | uninfected | whole blood | EARLY-uninfected | EARLY |
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Sample ID | !Sample Title | Infection | Tissue | Treatment | Age group | Age in days | Group name |
---|---|---|---|---|---|---|---|
GSM1707353 | 9A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707354 | 9B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707355 | 9C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707356 | 10A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707357 | 10B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707358 | 11A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707359 | 11B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707360 | 11C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707361 | 12A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707362 | 12B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707363 | 16A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707364 | 16B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707365 | 18B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707366 | 18C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707367 | 19B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707368 | 19C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707369 | 20C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707370 | 20C 2 |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707371 | 21C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707372 | 22C |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707373 | 23B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707374 | 23C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707375 | 24A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707376 | 24B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707377 | 26A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707378 | 26B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707379 | 26C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707380 | 28C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707381 | 29A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707382 | 29B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707383 | 29C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707384 | 30A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707385 | 4A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707386 | 4B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707387 | 4C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707388 | 7A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707389 | 7B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707390 | 7C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707391 | 8A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707392 | 8B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707393 | 8C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707394 | 32B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707395 | 32C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707396 | 33C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707397 | 34C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707398 | 35B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707399 | 35C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707400 | 36C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707401 | 37C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707402 | 38A |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707403 | 38B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707404 | 38C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707405 | 39B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707406 | 39C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707407 | 40B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707408 | 40C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707409 | 41B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707410 | 41C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707411 | 43A |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707412 | 43B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707413 | 43C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707414 | 44B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707415 | 44C |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707416 | 45C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707417 | 46C |
clinical sepsis |
whole blood |
LATE-clinical sepsis |
LATE |
>3 days |
late clinical sepsis |
GSM1707418 | 48A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707419 | 48B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707420 | 49B |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707421 | 50C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707422 | 51A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707423 | 51B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707424 | 51C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707425 | 52C |
clinical sepsis |
whole blood |
LATE-clinical sepsis |
LATE |
>3 days |
late clinical sepsis |
GSM1707426 | 54B |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707427 | 54C |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707428 | 55C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707429 | 56C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707430 | 79A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707431 | 79C |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707432 | 82A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707433 | 82B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707434 | 82C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707435 | 94A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707436 | 94C |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707437 | 96B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707438 | 99B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707439 | 99C |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707440 | 100A |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707441 | 100B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707442 | 103A |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707443 | 103B |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707444 | 104A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707445 | 104B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707446 | 105A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707447 | 105B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707448 | 109B |
clinical sepsis |
whole blood |
LATE-clinical sepsis |
LATE |
>3 days |
late clinical sepsis |
GSM1707449 | 109C |
clinical sepsis |
whole blood |
LATE-clinical sepsis |
LATE |
>3 days |
late clinical sepsis |
GSM1707450 | 112A |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707451 | 112C |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707452 | 115C |
Sepsis |
whole blood |
LATE Sepsis |
EARLY |
<3 days |
late sepsis |
GSM1707453 | 116B |
Sepsis |
whole blood |
LATE Sepsis |
EARLY |
<3 days |
late sepsis |
GSM1707454 | 116C |
Sepsis |
whole blood |
LATE Sepsis |
EARLY |
<3 days |
late sepsis |
GSM1707455 | 111C |
Sepsis |
whole blood |
LATE Sepsis |
EARLY |
<3 days |
late sepsis |
GSM1707456 | 118C |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707457 | 110C |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707458 | 119B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707459 | 121C |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707460 | 125A |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707461 | 125C |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707462 | 301A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707463 | 301B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707464 | 301C |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707465 | 111B |
Sepsis |
whole blood |
LATE Sepsis |
EARLY |
<3 days |
late sepsis |
GSM1707466 | 58C |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707467 | 59A |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707468 | 59B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707469 | 60A |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707470 | 60B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707471 | 61B |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707472 | 64A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707473 | 64B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707474 | 65A |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707475 | 67B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707476 | 68A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707477 | 68B |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707478 | 69A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707479 | 70A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707480 | 71A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707481 | 302A |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707482 | 302B |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707483 | 302C |
Sepsis |
whole blood |
LATE Sepsis |
LATE |
>3 days |
late sepsis |
GSM1707484 | 113C |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707485 | 306A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707486 | 306B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707487 | 306C |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707488 | 110Cr2 |
uninfected chorio |
whole blood |
EARLY-uninfected chorio |
EARLY |
<3 days |
early uninfected chorio |
GSM1707489 | 92A |
clinical sepsis |
whole blood |
EARLY-clinical sepsis |
EARLY |
<3 days |
early clinical sepsis |
GSM1707490 | 133A |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707491 | 133B |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707492 | 137C |
clinical sepsis |
whole blood |
LATE-clinical sepsis |
LATE |
>3 days |
late clinical sepsis |
GSM1707493 | 311B |
clinical sepsis |
whole blood |
LATE-clinical sepsis |
LATE |
>3 days |
late clinical sepsis |
GSM1707494 | 135B |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707495 | 135C |
Sepsis |
whole blood |
EARLY Sepsis |
EARLY |
<3 days |
early sepsis |
GSM1707496 | 83A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707497 | 84B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707498 | 84A |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707499 | 53B |
uninfected |
whole blood |
EARLY-uninfected |
EARLY |
<3 days |
early uninfected |
GSM1707500 | 57A |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707501 | 57B |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
GSM1707502 | 57C |
uninfected |
whole blood |
LATE-uninfected |
LATE |
>3 days |
late uninfected |
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