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Clinical

Subset of GSE25504 using platform GPL13667

Purpose

We aimed to identify the gene network and pathway biology associated with neonatal sepsis by determining genome-wide alterations in host RNA in infected infants

Hypothesis

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Experimental Design

Samples were obtained from control and infected human neonates.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U219 v1
20 Samples Loaded: 20
Human (Homo sapiens)
Neonatal , Whole Blood
Sepsis
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title Gender tissue Bloodculture result Corrected gestational age at sample (weeks+days)
GSM1404213 Con209 Male peripheral blood n/a 37+4
GSM1404214 Con213 Male peripheral blood n/a 30+5
GSM1404215 Con220 Male peripheral blood n/a 34+2
GSM1404216 Con260 Male peripheral blood n/a 29+3
GSM1404217 Con270 Male peripheral blood n/a 32+5
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Samples Viewer / Editor

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Sample ID !Sample Title Gender Tissue Bloodculture result Corrected gestational age at sample (weeks+days) On antibiotics at time of sample Other positive results Birthweight (g) Group name
GSM1404213
Con209
Male
peripheral blood
n/a
37+4
No
 
1120
Control
GSM1404214
Con213
Male
peripheral blood
n/a
30+5
No
 
890
Control
GSM1404215
Con220
Male
peripheral blood
n/a
34+2
No
 
1515
Control
GSM1404216
Con260
Male
peripheral blood
n/a
29+3
No
 
820
Control
GSM1404217
Con270
Male
peripheral blood
n/a
32+5
No
 
1875
Control
GSM1404218
Con293
Male
peripheral blood
n/a
29+3
No
 
855
Control
GSM1404219
Inf216
Female
peripheral blood
Enterococcus
34+3
Yes
 
810
Infected
GSM1404220
Inf226
Male
peripheral blood
Enterococcus & Staph. warneri
33+1
No
BC next day grew Staphylococcus warneri
1385
Infected
GSM1404221
Inf239
Male
peripheral blood
Pseudomonas aeruginosa & Coagulase -ve Staph. aureus
27+5
No
Next day, peritoneal swab enterococcus, pseudomonas aeruginosa and klebsiella oxytoca
680
Infected
GSM1404222
Inf262
Female
peripheral blood
Group B Strep.
39+6
No
 
690
Infected
GSM1404223
Inf271
Male
peripheral blood
Staph. epidermidis
35+6
Yes
grew yeasts 2 days later
1040
Infected
GSM1404224
Inf275
Male
peripheral blood
Coagulase -ve Staph. aureus
39+0
Yes
 
1255
Infected
GSM1404225
Inf287
Female
peripheral blood
E. coli
34+6
Yes
 
880
Infected
GSM1404226
Inf297
Male
peripheral blood
Serratia marcescens
35+4
No
 
1490
Infected
GSM1404227
Inf299
Male
peripheral blood
Serratia marcescens
36+2
Yes
 
1490
Infected
GSM1404228
NEC253
Female
peripheral blood
n/a
36+2
Yes
Coagulase -ve Staph. aureus previous day
1390
Necrotising colitis
GSM1404229
NEC283
Male
peripheral blood
n/a
31+5
Yes
Enterobacter cloacae, 6 days previously
1490
Necrotising colitis
GSM1404230
Vir228
Male
peripheral blood
n/a
34+3
No
Rhinovirus PCR +ve
1920
Virus infected
GSM1404231
Vir269
Male
peripheral blood
CMV
35+5
No
 
1290
Virus infected
GSM1404232
Vir278
Male
peripheral blood
n/a
32+2
No
Rhinovirus PCR +ve
855
Virus infected

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