Sample Set Annotation Tool: Whole blood mRNA expression profiling of host molecular networks in neonatal sepsis: GSE25504 (GPL570)

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

We aimed to identify the gene network and pathway biology associated with neonatal sepsis by determining genome-wide alterations in host RNA in infected infants

Hypothesis

Experimental Design

Samples were obtained from control and infected human neonates.

Experimental Variables

Controls

Methods

Additional Information

Expected Samples:

5 Samples Loaded: 5

Species

Human (Homo sapiens)

Sample Source

Whole Blood , Neonatal

Disease

Sepsis

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample Title	Gender	tissue	Bloodculture result	On antibiotics at time of sample
GSM1404208	Con006	Male	peripheral blood	negative	No
GSM1404209	Con014	Female	peripheral blood	na	No
GSM1404210	Con030	Male	peripheral blood	na	No
GSM1404211	Inf012	Female	peripheral blood	negative	No
GSM1404212	Inf032	Female	peripheral blood	negative	No

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File

GSE25504 GPL570 modified.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Gender	Tissue	Bloodculture result	On antibiotics at time of sample	Other positive results	Birthweight (g)	Corrected gestational age (weeks+days)	Group name
GSM1404208	Con006	Male	peripheral blood	negative	No	no	4240	41+3	Control
GSM1404209	Con014	Female	peripheral blood	na	No	no	2970	38+3	Control
GSM1404210	Con030	Male	peripheral blood	na	No	umbilical swab grew proteus (may represent colonisation)	3270	40+1	Control
GSM1404211	Inf012	Female	peripheral blood	negative	No	CSF: enterovirus on PCR. CSF also grew coag neg staph, CSF WCC 300, RBC 9	2150	34+6	Infected
GSM1404212	Inf032	Female	peripheral blood	negative	No	yes CSF grew Listeria monocytogenes, CSF white cell count 551, RBC 119, urine no growth	3180	41+1	Infected

Group Sets View in Gene Expression Browser

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Module Analysis

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SIDRA