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Clinical

Subset of GSE25504 using platform GPL570

Purpose

We aimed to identify the gene network and pathway biology associated with neonatal sepsis by determining genome-wide alterations in host RNA in infected infants

Hypothesis

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Experimental Design

Samples were obtained from control and infected human neonates.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
5 Samples Loaded: 5
Human (Homo sapiens)
Whole Blood , Neonatal
Sepsis
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title Gender tissue Bloodculture result On antibiotics at time of sample
GSM1404208 Con006 Male peripheral blood negative No
GSM1404209 Con014 Female peripheral blood na No
GSM1404210 Con030 Male peripheral blood na No
GSM1404211 Inf012 Female peripheral blood negative No
GSM1404212 Inf032 Female peripheral blood negative No
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File

GSE25504 GPL570 modified.csv
Sample Set Spreadsheet
Raw Signal
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Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Gender Tissue Bloodculture result On antibiotics at time of sample Other positive results Birthweight (g) Corrected gestational age (weeks+days) Group name
GSM1404208
Con006
Male
peripheral blood
negative
No
no
4240
41+3
Control
GSM1404209
Con014
Female
peripheral blood
na
No
no
2970
38+3
Control
GSM1404210
Con030
Male
peripheral blood
na
No
umbilical swab grew proteus (may represent colonisation)
3270
40+1
Control
GSM1404211
Inf012
Female
peripheral blood
negative
No
CSF: enterovirus on PCR. CSF also grew coag neg staph, CSF WCC 300, RBC 9
2150
34+6
Infected
GSM1404212
Inf032
Female
peripheral blood
negative
No
yes CSF grew Listeria monocytogenes, CSF white cell count 551, RBC 119, urine no growth
3180
41+1
Infected

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