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Clinical

This SubSeries is part of SuperSeries GSE36994: Comparative profiling of human fetal and adult erythropoiesis

Purpose

IRF2, IRF6, and MYB are candidate regulators of human erythropoiesis. We here examine primary CD34+ hematopoietic stem/progenitor cells (HSPCs)-derived erythroid progenitors with control, IRF2, IRF6, or MYB shRNA lentiviral transduction prior to differentiation. Gene expression microarray profiling datasets for MYB shRNA and control shRNA were obtained from Gene Expression Omnibus (GEO) under accession number GSE25678. The data were analyzed together with the datasets obtained in this study.

Hypothesis

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Experimental Design

Primary maturing adult erythroblasts were generated ex vivo from CD34+ hematopoietic stem/progenitor cells (HSPCs) using a serum-free two-phase liquid culture system. CD34+ HSPCs were transduced with lentiviruses containing shRNAs against IRF2 or IRF6 gene, selected and differentiated to proerythroblasts (ProEs). Cells were harvested at day 5 of differentiated and total RNA were extracted. This was used to hybridize to Affymetrix expression arrays using the HG-U133 Plus 2.0 platform.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix Affymetrix-U133 v2
20 Samples Loaded: 20
Human (Homo sapiens)
Erythroid cells , Adult , Fetal
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title tissue Developmental stage transfection Group name
GSM908090 Fetal day5-A ex vivo differentiating ProEs 2-trimester fetal liver none fetal ProEs
GSM908091 Fetal day5-B ex vivo differentiating ProEs 2-trimester fetal liver none fetal ProEs
GSM908092 Fetal day5-C ex vivo differentiating ProEs 2-trimester fetal liver none fetal ProEs
GSM908093 Adult day5-A ex vivo differentiating ProEs adult bone marrow none adult ProEs
GSM908094 Adult day5-B ex vivo differentiating ProEs adult bone marrow none adult ProEs
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Sample ID !Sample Title Tissue Developmental stage Transfection Group name
GSM908090
Fetal day5-A
ex vivo differentiating ProEs
2-trimester fetal liver
none
fetal ProEs
GSM908091
Fetal day5-B
ex vivo differentiating ProEs
2-trimester fetal liver
none
fetal ProEs
GSM908092
Fetal day5-C
ex vivo differentiating ProEs
2-trimester fetal liver
none
fetal ProEs
GSM908093
Adult day5-A
ex vivo differentiating ProEs
adult bone marrow
none
adult ProEs
GSM908094
Adult day5-B
ex vivo differentiating ProEs
adult bone marrow
none
adult ProEs
GSM908095
Adult day5-C
ex vivo differentiating ProEs
adult bone marrow
none
adult ProEs
GSM908096
IRF2 shRNA-A
ex vivo differentiating ProEs
adult bone marrow
shRNAs against IRF2
adult ProEs IRF2-KO
GSM908097
IRF2 shRNA-B
ex vivo differentiating ProEs
adult bone marrow
shRNAs against IRF2
adult ProEs IRF2-KO
GSM908098
IRF2 shRNA-C
ex vivo differentiating ProEs
adult bone marrow
shRNAs against IRF2
adult ProEs IRF2-KO
GSM908099
IRF6 shRNA-A
ex vivo differentiating ProEs
adult bone marrow
shRNAs against IRF6
adult ProEs IRF6-KO
GSM908100
IRF6 shRNA-B
ex vivo differentiating ProEs
adult bone marrow
shRNAs against IRF6
adult ProEs IRF6-KO
GSM908101
IRF6 shRNA-C
ex vivo differentiating ProEs
adult bone marrow
shRNAs against IRF6
adult ProEs IRF6-KO
GSM908102
Control shRNA-A
ex vivo differentiating ProEs
adult bone marrow
control shRNAs
adult ProEs transfection ctl.
GSM908103
Control shRNA-B
ex vivo differentiating ProEs
adult bone marrow
control shRNAs
adult ProEs transfection ctl.
GSM908104
Control shRNA-C
ex vivo differentiating ProEs
adult bone marrow
control shRNAs
adult ProEs transfection ctl.
GSM908105
Control shRNA-D
ex vivo differentiating ProEs
adult bone marrow
control shRNAs
adult ProEs transfection ctl.
GSM908106
MYB shRNA-A
ex vivo differentiating ProEs
adult bone marrow
shRNAs against MYB
adult ProEs MYB-KO
GSM908107
MYB shRNA-B
ex vivo differentiating ProEs
adult bone marrow
shRNAs against MYB
adult ProEs MYB-KO
GSM908108
MYB shRNA-C
ex vivo differentiating ProEs
adult bone marrow
shRNAs against MYB
adult ProEs MYB-KO
GSM908109
MYB shRNA-D
ex vivo differentiating ProEs
adult bone marrow
shRNAs against MYB
adult ProEs MYB-KO

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