This SubSeries is part of SuperSeries GSE36994: Comparative profiling of human fetal and adult erythropoiesis
IRF2, IRF6, and MYB are candidate regulators of human erythropoiesis. We here examine primary CD34+ hematopoietic stem/progenitor cells (HSPCs)-derived erythroid progenitors with control, IRF2, IRF6, or MYB shRNA lentiviral transduction prior to differentiation. Gene expression microarray profiling datasets for MYB shRNA and control shRNA were obtained from Gene Expression Omnibus (GEO) under accession number GSE25678. The data were analyzed together with the datasets obtained in this study.
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Primary maturing adult erythroblasts were generated ex vivo from CD34+ hematopoietic stem/progenitor cells (HSPCs) using a serum-free two-phase liquid culture system. CD34+ HSPCs were transduced with lentiviruses containing shRNAs against IRF2 or IRF6 gene, selected and differentiated to proerythroblasts (ProEs). Cells were harvested at day 5 of differentiated and total RNA were extracted. This was used to hybridize to Affymetrix expression arrays using the HG-U133 Plus 2.0 platform.
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Sample ID | !Sample Title | tissue | Developmental stage | transfection | Group name |
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GSM908090 | Fetal day5-A | ex vivo differentiating ProEs | 2-trimester fetal liver | none | fetal ProEs |
GSM908091 | Fetal day5-B | ex vivo differentiating ProEs | 2-trimester fetal liver | none | fetal ProEs |
GSM908092 | Fetal day5-C | ex vivo differentiating ProEs | 2-trimester fetal liver | none | fetal ProEs |
GSM908093 | Adult day5-A | ex vivo differentiating ProEs | adult bone marrow | none | adult ProEs |
GSM908094 | Adult day5-B | ex vivo differentiating ProEs | adult bone marrow | none | adult ProEs |
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Sample ID | !Sample Title | Tissue | Developmental stage | Transfection | Group name |
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GSM908090 | Fetal day5-A |
ex vivo differentiating ProEs |
2-trimester fetal liver |
none |
fetal ProEs |
GSM908091 | Fetal day5-B |
ex vivo differentiating ProEs |
2-trimester fetal liver |
none |
fetal ProEs |
GSM908092 | Fetal day5-C |
ex vivo differentiating ProEs |
2-trimester fetal liver |
none |
fetal ProEs |
GSM908093 | Adult day5-A |
ex vivo differentiating ProEs |
adult bone marrow |
none |
adult ProEs |
GSM908094 | Adult day5-B |
ex vivo differentiating ProEs |
adult bone marrow |
none |
adult ProEs |
GSM908095 | Adult day5-C |
ex vivo differentiating ProEs |
adult bone marrow |
none |
adult ProEs |
GSM908096 | IRF2 shRNA-A |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against IRF2 |
adult ProEs IRF2-KO |
GSM908097 | IRF2 shRNA-B |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against IRF2 |
adult ProEs IRF2-KO |
GSM908098 | IRF2 shRNA-C |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against IRF2 |
adult ProEs IRF2-KO |
GSM908099 | IRF6 shRNA-A |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against IRF6 |
adult ProEs IRF6-KO |
GSM908100 | IRF6 shRNA-B |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against IRF6 |
adult ProEs IRF6-KO |
GSM908101 | IRF6 shRNA-C |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against IRF6 |
adult ProEs IRF6-KO |
GSM908102 | Control shRNA-A |
ex vivo differentiating ProEs |
adult bone marrow |
control shRNAs |
adult ProEs transfection ctl. |
GSM908103 | Control shRNA-B |
ex vivo differentiating ProEs |
adult bone marrow |
control shRNAs |
adult ProEs transfection ctl. |
GSM908104 | Control shRNA-C |
ex vivo differentiating ProEs |
adult bone marrow |
control shRNAs |
adult ProEs transfection ctl. |
GSM908105 | Control shRNA-D |
ex vivo differentiating ProEs |
adult bone marrow |
control shRNAs |
adult ProEs transfection ctl. |
GSM908106 | MYB shRNA-A |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against MYB |
adult ProEs MYB-KO |
GSM908107 | MYB shRNA-B |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against MYB |
adult ProEs MYB-KO |
GSM908108 | MYB shRNA-C |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against MYB |
adult ProEs MYB-KO |
GSM908109 | MYB shRNA-D |
ex vivo differentiating ProEs |
adult bone marrow |
shRNAs against MYB |
adult ProEs MYB-KO |
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