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Clinical

GSE52129

Purpose

Given their precipitous encounter with the environment, newborn infants might be expected to possess abundant immunoprotective mechanisms. Paradoxically, their T cells display grossly impaired Th1 anti-bacterial and anti-viral responses. This study identifies factors produced by neonatal CD4 T cells when compared with adult naive CD4 T cells and highlights CXCL8 as a pivotal effector molecule in neonatal T cells. Using Affimetrix microarray we compared gene expression in cord blood derived CD4 T cells with naive CD4 T cells from adults after polyclonal stimulation.

Hypothesis

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Experimental Design

The Affymetrix GeneChip Human Genome 1.0 ST array were used to define gene expression profiles in each of the CD4 T cell samples.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HuGene 1.0 ST v1
12 Samples Loaded: 12
Human (Homo sapiens)
CD4+ T cells , Adult , Neonatal
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title group Cell type
GSM1260083 Sorted CD38+ naive CD4 T cells from cord blood 1 newborn CD38+ Cord blood CD4 T cells
GSM1260084 Sorted CD38+ naive CD4 T cells from cord blood 2 newborn CD38+ Cord blood CD4 T cells
GSM1260085 Sorted CD38+ naive CD4 T cells from cord blood 3 newborn CD38+ Cord blood CD4 T cells
GSM1260086 Sorted CD38+ naive CD4 T cells from cord blood 4 newborn CD38+ Cord blood CD4 T cells
GSM1260087 Sorted CD38+ naive CD4 T cells from adult 1 adult CD38+ Adult CD4 T cells
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Sample ID !Sample Title Group Cell type
GSM1260083
Sorted CD38+ naive CD4 T cells from cord blood 1
newborn CD38+
Cord blood CD4 T cells
GSM1260084
Sorted CD38+ naive CD4 T cells from cord blood 2
newborn CD38+
Cord blood CD4 T cells
GSM1260085
Sorted CD38+ naive CD4 T cells from cord blood 3
newborn CD38+
Cord blood CD4 T cells
GSM1260086
Sorted CD38+ naive CD4 T cells from cord blood 4
newborn CD38+
Cord blood CD4 T cells
GSM1260087
Sorted CD38+ naive CD4 T cells from adult 1
adult CD38+
Adult CD4 T cells
GSM1260088
Sorted CD38- naive CD4 T cells from adult 1
adult CD38-
Adult CD4 T cells
GSM1260089
Sorted CD38+ naive CD4 T cells from adult 2
adult CD38+
Adult CD4 T cells
GSM1260090
Sorted CD38- naive CD4 T cells from adult 2
adult CD38-
Adult CD4 T cells
GSM1260091
Sorted CD38+ naive CD4 T cells from adult 3
adult CD38+
Adult CD4 T cells
GSM1260092
Sorted CD38- naive CD4 T cells from adult 3
adult CD38-
Adult CD4 T cells
GSM1260093
Sorted CD38+ naive CD4 T cells from adult 4
adult CD38+
Adult CD4 T cells
GSM1260094
Sorted CD38- naive CD4 T cells from adult 4
adult CD38-
Adult CD4 T cells

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